PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G155600.1.p
Common NameGLYMA_17G155600, LOC102660795
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 232aa    MW: 25699.9 Da    PI: 6.7463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G155600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00033658123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ C + F++   L  H+++H
  Glyma.17G155600.1.p 36 YYCSFCRREFRSAQALGGHMNVH 58
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.28E-63363No hitNo description
PROSITE profilePS5015711.0113663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MWNPRDHEDQ DESWEVRAFA EDTSNMMGTT WPPRFYYCSF CRREFRSAQA LGGHMNVHRR  60
DRARLHQASV VPHNNNNSNN SNINPISSFS NTPSFLNISH HHQDPFVANG GLCLLYPFPS  120
PNNNNNDPFS SLAHNNNACG DLPSTVFSVS SSHSQYSSLQ YSPIRVPSCS ATSFDFSVAQ  180
PAAASGRNNA FSSSYSGKVE QEPIISSSTH HGLHHEELDL ELRLGNKSTS T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-113158229superman protein
2l1o_A2e-113158229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.241030.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G155600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-52AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600897.11e-171zinc finger protein 10
RefseqXP_006600898.11e-171zinc finger protein 10
TrEMBLI1MVF61e-169I1MVF6_SOYBN; Uncharacterized protein
STRINGGLYMA17G16690.21e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-32C2H2 family protein