PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G162000.1.p

Common Name

GLYMA_17G162000, LOC100818328

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 231aa MW: 25195.5 Da PI: 7.6447

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G162000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.5	6.5e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++ Glyma.17G162000.1.p 2 SCNGCRVLRKGCSESCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNW 91 6*******************9999777889****************************************************** PP DUF260 86 qleqlkaelall 97 +++q+++e++l+ Glyma.17G162000.1.p 92 HVCQAAVETVLR 103 ****999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.986	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISNVPENQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELMGLDAAA 120 AAAAAADETS EAEVGCTDTW RIRNPNTNCR FTSSRSSSGG GGGKRKRSEE LAKLQEQQPN 180 LDLRLTPVFL QKEESRRPES PSMTSEESGT TTENRFGDQW SHWKVLNLFI *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.9319	0.0	cotyledon\| flower\| hypocotyl\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G162000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	3e-64	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003550015.1	1e-170	LOB domain-containing protein 38
Refseq	XP_028211670.1	1e-170	LOB domain-containing protein 38-like
Swissprot	Q9SN23	1e-84	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A445G7L2	1e-168	A0A445G7L2_GLYSO; LOB domain-containing protein 38
TrEMBL	I1MVN0	1e-168	I1MVN0_SOYBN; Uncharacterized protein
STRING	GLYMA17G17540.1	1e-169	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-75	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Glyma.17G162000.1.p
Entrez Gene	100818328