PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G167100.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 220aa    MW: 23336.5 Da    PI: 5.0988
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G167100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-131248138
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                         +g+W++eEde l ++v+++G+++W++I+r ++ gR lk
  Glyma.17G167100.1.p 12 KGPWSPEEDEALQKLVERHGPRNWSLISRSIP-GRPLK 48
                         79******************************.99775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.393755IPR017930Myb domain
SuperFamilySSF466893.44E-10746IPR009057Homeodomain-like
SMARTSM007172.1E-51160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-121246IPR009057Homeodomain-like
PfamPF002491.2E-111246IPR001005SANT/Myb domain
CDDcd001677.08E-111445No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAVARKEMDR IKGPWSPEED EALQKLVERH GPRNWSLISR SIPGRPLKRS FSAGTAVPPP  60
GSPSGSDVSE SSAAPGVVSV SVSPSQVFRP VPVRPVVETA SSQDDADADA EDAGPTTSLS  120
LSLPGVESSE ISNRTSTVPV MPVHTVAAAA PVPLPAPEVG LGALNLNAEF MAVMHEMIRK  180
EVRSYMEQQN GMMCFQGMEM MEGFRNVSVK RIGISRVDS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.318470.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G167100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524661.18e-96transcription factor MYB44
RefseqXP_028232134.18e-96transcription factor MYB44-like
TrEMBLA0A368UHZ01e-155A0A368UHZ0_SOYBN; Uncharacterized protein
STRINGGLYMA17G18310.21e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.14e-20myb domain protein 70