PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G178200.1.p
Common NameGLYMA_17G178200, LOC102663028
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 192aa    MW: 21284.3 Da    PI: 8.5882
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G178200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260107.21.3e-3341032100
               DUF260   2 CaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          C aCk++rr+C +d C++apyfpae+ ++fa+vh++FG  nv ++l+ ++++ r  ++++l+y+Aear+rdPv+G+vg+i++l+++ +++
  Glyma.17G178200.1.p   4 CGACKYQRRRCYSDiCMFAPYFPAENIQRFACVHHVFGGGNVGSMLNITKPKLRGWVVKTLAYQAEARVRDPVHGCVGLIRELEENHRKV 93 
                          ***********9999*************************************************************************** PP

               DUF260  91 kaelallkee 100
                          k++la+++ e
  Glyma.17G178200.1.p  94 KEDLAKAQME 103
                          *****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.7132104IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-334101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSTCGACKYQ RRRCYSDICM FAPYFPAENI QRFACVHHVF GGGNVGSMLN ITKPKLRGWV  60
VKTLAYQAEA RVRDPVHGCV GLIRELEENH RKVKEDLAKA QMELARYMGP EFVRKLSPNY  120
GGESSLKGKF VAHLQPTTME LDFAPSIAID VDDLDKWDPF PPWETSFQNV GPSSSHAHGE  180
GGNRKGKGVA P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-30210710114LOB family transfactor Ramosa2.1
5ly0_B9e-30210710114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In embryo sac, detected as early as the one-nucleus stage. In older embryo sacs, highest expression in antipodal cells. {ECO:0000269|PubMed:17209126}.
UniprotTISSUE SPECIFICITY: Expressed in leaves, leaf primordia, immature ears, immature tassels, whole ovules, silk and husk leaves. Found on the adaxial side of organs. {ECO:0000269|PubMed:17209126}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G178200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601001.11e-144LOB domain-containing protein 24
RefseqXP_028208329.11e-144LOB domain-containing protein 24-like
SwissprotQ32SG34e-32LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A0B2QZR91e-142A0A0B2QZR9_GLYSO; LOB domain-containing protein 6
TrEMBLK7MM901e-142K7MM90_SOYBN; Uncharacterized protein
STRINGGLYMA17G20486.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1945945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23660.25e-34LOB domain-containing protein 10