PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G180800.1.p
Common NameGLYMA_17G180800, LOC100815521
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 161aa    MW: 18475.4 Da    PI: 9.2331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G180800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.6e-1492137555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+rRR+ri++++  L+ l+P++      K +Ka +L +A+eY+k+Lq
  Glyma.17G180800.1.p  92 HNLYEKRRRSRIKEKMKALQNLIPNS-----NKTNKALMLDEAIEYLKQLQ 137
                          9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1884150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.31E-1485141No hitNo description
Gene3DG3DSA:4.10.280.104.4E-1885142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.00587136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-1192137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-1493142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTSSWRSSAC APWTMSTIGT SRTLTIMMRR STICTTLTET FQASTLMSFL PPQENPNFVN  60
PQLLFPLLYS SQQIPIPPLC SSSKRSRAVE FHNLYEKRRR SRIKEKMKAL QNLIPNSNKT  120
NKALMLDEAI EYLKQLQLQE QGFIATLYYV EECEILTQNE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G180800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1477276e-55BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624907.11e-115transcription factor NAI1 isoform X1
TrEMBLK7MMB31e-113K7MMB3_SOYBN; Uncharacterized protein
STRINGGLYMA17G21573.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3649722
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.12e-25bHLH family protein