PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G180800.2.p
Common NameGLYMA_17G180800, LOC100815521
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 117aa    MW: 13390.5 Da    PI: 9.2904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G180800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-1253931055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         +rRR+ri++++  L+ l+P++      K +Ka +L +A+eY+k+Lq
  Glyma.17G180800.2.p 53 QRRRSRIKEKMKALQNLIPNS-----NKTNKALMLDEAIEYLKQLQ 93
                         7*******************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.0944392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1452106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-95393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-85398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-155398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.97E-115397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MTSSWRSSAC APWTMSTIGT SRTLTIMMRR STICTTLTET FQASTLMSFL PPQRRRSRIK  60
EKMKALQNLI PNSNKTNKAL MLDEAIEYLK QLQLQEQGFI ATLYYVEECE ILTQNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G180800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1477274e-37BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624908.12e-80transcription factor PIF1 isoform X2
TrEMBLK7MMB45e-79K7MMB4_SOYBN; Uncharacterized protein
STRINGGLYMA17G21573.11e-70(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.13e-20bHLH family protein