PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G188500.2.p
Common NameGLYMA_17G188500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 241aa    MW: 26409.2 Da    PI: 10.3486
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G188500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.6e-1364116456
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                          +kr rrk +NRe+ArrsR+RK+a ++ Le  v+ L  eN  L k+l   +++ 
  Glyma.17G188500.2.p  64 VKRLRRKVSNRESARRSRRRKQAHLADLEWQVERLRLENANLFKQLTDASQQF 116
                          79****************************************97776666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-1261125IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.00163126IPR004827Basic-leucine zipper domain
PfamPF001708.6E-1164112IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-1165115No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-865101No hitNo description
CDDcd147021.76E-766117No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.101.5E-4102135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQARSFHRRS FPKPVGSPLS ANKPNARDNQ VKGATTTTSG SSREPSDEDD EAGPCEQSTN  60
AIDVKRLRRK VSNRESARRS RRRKQAHLAD LEWQVERLRL ENANLFKQLT DASQQFREAD  120
TNNRVLKSDV EALRAKVKLA EDMITRGTLT PTNNQILQNQ SPLNTPPQLN TNNLRRMGYV  180
SPTFTVHGND ATASYGGGIT VSGQNSPLGG LGNLDNIPCS DFNSGVNSDN AVSSMTSMWP  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16783RRKVSNRESARRSRRRK
27784RRSRRRKQ
37984SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.243550.0cotyledon| flower| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G188500.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601038.11e-165basic leucine zipper 9
RefseqXP_028208214.11e-165basic leucine zipper 9-like
SwissprotQ9FUD32e-57BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A0R0FPK31e-176A0A0R0FPK3_SOYBN; Uncharacterized protein
STRINGGLYMA17G24602.11e-164(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-46basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]