PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G194100.1.p
Common NameGLYMA_17G194100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 238aa    MW: 25998 Da    PI: 5.3396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G194100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-184090155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Glyma.17G194100.1.p 40 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALGIKG 90
                         68*****998.**********843...6*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-124088IPR001471AP2/ERF domain
PROSITE profilePS5103223.3274198IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-214199IPR016177DNA-binding domain
SMARTSM003805.6E-3541104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-314199IPR001471AP2/ERF domain
CDDcd000189.29E-3142100No hitNo description
PRINTSPR003672.4E-104253IPR001471AP2/ERF domain
PRINTSPR003672.4E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRVSAQNSTS FLPSSPSSSS PPLSSESKTE KRNRESNNHP VYRGVRMRNW GKWVSEIREP  60
RKKSRIWLGT FPTPEMAARA HDVAALGIKG NNAILNFPEL AALLPRPVSL ASRDVQAAAA  120
KAAHMDLPSS SSSISLSLGS TTPSSSSSSL SSLASTADLL LLSTASEELS EIIELPRLET  180
TSYELGNEFV FMDSQDTWMY QPPIPWLHTT YDGSDANEFA VPESRVVTNF EGFLWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1739981272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.287440.0pod| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G194100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354440.0AC235444.1 Glycine max strain Williams 82 clone GM_WBb0158O04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551139.21e-170ethylene-responsive transcription factor TINY
SwissprotQ9LYD32e-65DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLK7MMN01e-170K7MMN0_SOYBN; Uncharacterized protein
STRINGGLYMA17G27520.21e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]