PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G212900.1.p
Common NameGLYMA_17G212900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 90aa    MW: 10216.1 Da    PI: 10.4072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G212900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH192.6e-067481055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         + RR++i +++  L++l P      +k   K+ +L + ++YI+sLq
  Glyma.17G212900.1.p  7 QARRKKISERMKILQDLFPGF----NKVIGKSLVLDEIINYIQSLQ 48
                         57******************7....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.683147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0015353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-12765IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-121066IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MFVDAGQARR KKISERMKIL QDLFPGFNKV IGKSLVLDEI INYIQSLQRQ VEFLSMKLEV  60
VNSRLNSGIE AFPPKDVSLK HPLLLTLNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.251341e-97flower| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is specifically expressed in flowers, mostly in petals, inflorescence and flower buds. Isoform 2 is expressed ubiquitously (leaves, flowers and stems). {ECO:0000269|PubMed:16902407}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G212900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1407541e-54BT140754.1 Medicago truncatula clone JCVI-FLMt-7G3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020238985.11e-38transcription factor BHLH089 isoform X2
SwissprotQ0JXE72e-36BPE_ARATH; Transcription factor BPE
TrEMBLA0A0R0FQW35e-57A0A0R0FQW3_SOYBN; Uncharacterized protein
TrEMBLA0A445G9Y75e-57A0A445G9Y7_GLYSO; Transcription factor BPE
STRINGAES851269e-43(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.29e-39BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]