PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G223100.1.p

Common Name

GLYMA_17G223100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 260aa MW: 29451.1 Da PI: 5.394

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G223100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.6e-09	161	208	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +hn +Er RR +iN+++ L+ ++P + k +s a +L + ++Y sL+ Glyma.17G223100.1.p 161 SHNLAERVRRGKINEKLRYLQNIVPGC----YKTMSMAVMLDEIINYFLSLE 208 8***********************8....366***********99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.15E-13	155	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.05E-8	155	208	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.3E-13	157	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.608	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	161	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-5	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MAEFTENLQN ISSSSPFLDI DPSMELLNQF IGMNQLYVLD NSNLMPYFSC DTFLGPQEPE 60 FPGNLEEDFP FLFHHVNHNA PPVSLPIFQA ENEIHEGNKR KSMDLLETSF ANSTSAVSET 120 GSKIKHSSGR GKRLKNNVTE EEEKAKEVVN ARARRGQATD SHNLAERVRR GKINEKLRYL 180 QNIVPGCYKT MSMAVMLDEI INYFLSLELT AASTFYDFNS EIDAFETMQR SRAYEAKELG 240 KYKREGHGGV SLLQPTWHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G223100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031256	1e-155	KT031256.1 Glycine max clone HN_CCL_43 bHLH transcription factor (Glyma07g10311.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003550247.1	0.0	transcription factor BEE 1
Refseq	XP_028209065.1	0.0	transcription factor BEE 1-like
Swissprot	Q8GZ13	9e-47	BEE1_ARATH; Transcription factor BEE 1
TrEMBL	I1MX53	0.0	I1MX53_SOYBN; Uncharacterized protein
STRING	GLYMA17G34010.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	1e-44	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	Glyma.17G223100.1.p

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]