PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G224800.2.p
Common NameGLYMA_17G224800, LOC100796836
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 150aa    MW: 17452.1 Da    PI: 5.32
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G224800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.84.1e-3288146159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYG+K+vk+s++pr+YYrC+  gC+vkk+ver+++dp++v++tYeg+H+h+
  Glyma.17G224800.2.p  88 LDDGYRWRKYGKKMVKNSPNPRNYYRCSVDGCNVKKRVERDKDDPRYVITTYEGNHTHP 146
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-3474147IPR003657WRKY domain
SuperFamilySSF1182904.58E-2981147IPR003657WRKY domain
PROSITE profilePS5081131.06683148IPR003657WRKY domain
SMARTSM007742.7E-3788147IPR003657WRKY domain
PfamPF031061.4E-2589146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MTDKIPKPPP PDTPDSDDFT NQWPFELSEY LKFDDNQWMH DGLESFASEN VSNQVHQVSN  60
AEDTSSGREN REVRERVAFK IMSEIEVLDD GYRWRKYGKK MVKNSPNPRN YYRCSVDGCN  120
VKKRVERDKD DPRYVITTYE GNHTHPSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2678145774Probable WRKY transcription factor 4
2lex_A4e-2678145774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G224800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-33AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625133.11e-109probable WRKY transcription factor 50 isoform X3
TrEMBLK7MND91e-107K7MND9_SOYBN; Uncharacterized protein
STRINGGLYMA17G34210.28e-90(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-41WRKY DNA-binding protein 50