PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G224800.5.p

Common Name

GLYMA_17G224800

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 123aa MW: 14240.6 Da PI: 4.6942

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G224800.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	32.6	1.6e-10	87	109	1	23
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYG+K+vk+s++p + Glyma.17G224800.5.p 87 LDDGYRWRKYGKKMVKNSPNPSG 109 59******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-11	73	109	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-9	80	110	IPR003657	WRKY domain
PROSITE profile	PS50811	14.091	82	122	IPR003657	WRKY domain
SMART	SM00774	0.0048	87	122	IPR003657	WRKY domain
Pfam	PF03106	3.9E-6	88	108	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MTDKIPKPPP PDTPDSDDFT NQWPFELSEY LKFDDNQWMH DGLESFASEN VSNQVHQVSN 60 ADTSSGRENR EVRERVAFKI MSEIEVLDDG YRWRKYGKKM VKNSPNPSGW MQREKESGER 120 QG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G224800.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	6e-33	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014625134.1	8e-61	probable WRKY transcription factor 50 isoform X4
Swissprot	Q8VWQ5	5e-13	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A0R0FS54	1e-85	A0A0R0FS54_SOYBN; Uncharacterized protein
STRING	GLYMA17G34210.2	6e-56	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	9e-16	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Glyma.17G224800.5.p

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]