PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G236300.1.p

Common Name

LOC100781993

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 169aa MW: 18820.6 Da PI: 7.775

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G236300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.4	5.3e-29	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ C+l+ ++ p++q++++ +++k+FG+s ++++++++pe++r+++++sl++e++ r+ +Pv+Gavg+++++++ Glyma.17G236300.1.p 2 SCNGCRVLRKGCSDTCPLRSCLqwiesPESQRHATLFLAKFFGRSDLMSFISSVPETKRPALFQSLLFEGCGRMVNPVNGAVGLLSSGKW 91 6*************************************************************************************** PP DUF260 86 qleqlkaelal 96 +++q+++e++l Glyma.17G236300.1.p 92 HVCQAAVETVL 102 ***999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.663	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MSCNGCRVLR KGCSDTCPLR SCLQWIESPE SQRHATLFLA KFFGRSDLMS FISSVPETKR 60 PALFQSLLFE GCGRMVNPVN GAVGLLSSGK WHVCQAAVET VLDGGVLRPS SETFTGDSDD 120 TRYHLRTLTL MHDVREMNEN SSLMNRPQEL EMASYGNHKK NQILNLFM*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.55644	0.0	seed coat

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G236300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006601268.1	1e-124	LOB domain-containing protein 39
Swissprot	Q9SZE8	2e-60	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A368UGU2	1e-122	A0A368UGU2_SOYBN; Uncharacterized protein
STRING	GLYMA17G35440.1	1e-123	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	7e-63	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	Glyma.17G236300.1.p
Entrez Gene	100781993