PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G240300.1.p
Common NameGLYMA_17G240300, LOC100788918
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 245aa    MW: 28079.6 Da    PI: 9.8646
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G240300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.32e-2197156357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Glyma.17G240300.1.p  97 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLskygKIEGKNVFYWFQNHKARERQ 156
                          7*****************99**************************************97 PP
2Wus_type_Homeobox119.51.4e-3897158465
    Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq
  Glyma.17G240300.1.p  97 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKQ 158
                          8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.3E-794161IPR001356Homeobox domain
SuperFamilySSF466897.45E-1296161IPR009057Homeodomain-like
CDDcd000861.25E-497158No hitNo description
PfamPF000463.8E-1997156IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-798156IPR009057Homeodomain-like
PROSITE profilePS5007110.042102157IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MKVHQFARGF WEHEPSLTLG CKRLRPLAPK LSNTDDTISP PHHHPVTTLD LKSFIKPQSA  60
SRKLGIGSSS DDNNNNNNKR DPSSPHGQVE THIPGGTRWN PTQEQIGILE MLYRGGMRTP  120
NAQQIEQITA QLSKYGKIEG KNVFYWFQNH KARERQKQKR NNLGLAHSLR TTPTTIVSHP  180
FSCSVITTLD TTKRGEIVER EEEDSPLKKC RSWAFEYLED QREEEHRTLE LFPLHPEGRR  240
RGLF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.548320.0epicotyl| hypocotyl| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G240300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0916190.0BT091619.1 Soybean clone JCVI-FLGm-8M2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601279.10.0WUSCHEL-related homeobox 4
SwissprotQ6X7J92e-67WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLK7MNN60.0K7MNN6_SOYBN; Uncharacterized protein
STRINGGLYMA17G35880.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61323452
Representative plantOGRP71671117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-69WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]