PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G245200.1.p
Common NameGLYMA_17G245200, LOC100802503
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 248aa    MW: 27737.2 Da    PI: 10.441
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G245200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-1674119147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g+W++ Ed +l  +v+ +G+++W++I+r++  gR++k+c++rw + 
  Glyma.17G245200.1.p  74 KGPWSAKEDRILTGLVEAHGPRNWASISRHIK-GRSGKSCRLRWCNQ 119
                          79*****************************9.***********985 PP
2Myb_DNA-binding51.91.8e-16128168345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +++t Ede +++a++++G++ W+tIar+++ gRt++ +k++w+
  Glyma.17G245200.1.p 128 PFSTREDEVILHAHARFGNK-WATIARMLP-GRTDNAVKNHWN 168
                          79******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.4372124IPR017930Myb domain
SuperFamilySSF466898.99E-3072167IPR009057Homeodomain-like
SMARTSM007175.6E-1473122IPR001005SANT/Myb domain
PfamPF002491.0E-1574119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2275127IPR009057Homeodomain-like
CDDcd001671.61E-1276118No hitNo description
SMARTSM007171.5E-13125173IPR001005SANT/Myb domain
PROSITE profilePS5129417.911126175IPR017930Myb domain
CDDcd001673.26E-10128171No hitNo description
Gene3DG3DSA:1.10.10.609.4E-21128174IPR009057Homeodomain-like
PfamPF002492.3E-13128168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MNLTHFPLHI YNFPDNHHSS KCHTLKHKQT PKKEKMKAMK RCSSSSSSSY SSASESTPQS  60
NQNKNSNNFC YKIKGPWSAK EDRILTGLVE AHGPRNWASI SRHIKGRSGK SCRLRWCNQL  120
SPTVEHRPFS TREDEVILHA HARFGNKWAT IARMLPGRTD NAVKNHWNAT LKRRRFGADV  180
VVEDDPLTAL TLAPPGSGCC GRGEERRGVS PAGFWDAMRD VVAREVRGYV SSSFSDNLAS  240
NEGLSKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-38731743104MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-387317457158MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-387317457158MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-38731743104C-Myb DNA-Binding Domain
1msf_C3e-38731743104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G245200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549412.20.0transcription factor MYB25
RefseqXP_028210122.10.0transcription factor MYB25-like
TrEMBLA0A445GBJ50.0A0A445GBJ5_GLYSO; Transcription factor MYB73
TrEMBLK7MNR70.0K7MNR7_SOYBN; Uncharacterized protein
STRINGGLYMA17G36370.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-53myb domain protein 73