PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G245900.2.p
Common NameGLYMA_17G245900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 534aa    MW: 59798.2 Da    PI: 8.3986
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G245900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.1e-158683599
                         EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          ++l+ +sg++W+v+l   k+ +  +l  GW+ Fv +++L+ g+ +vF+++g+  f  +v+vf+k
  Glyma.17G245900.2.p  8 SVSLTGPSGKTWTVQL--IKQENDLFLHHGWSTFVVDHQLECGELLVFRYEGHLHF--TVQVFDK 68
                         48999***********..999999**************************987666..9999997 PP
2B348.51.6e-15188279195
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  Fv+ n++k+gD+++F+l+++ e
  Glyma.17G245900.2.p 188 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECE 275
                          556677778888899*******98996..46999***************954566666799***********************998655 PP

                          E..EEE CS
                   B3  90 felvvk 95 
                             +v+
  Glyma.17G245900.2.p 276 L--RVR 279
                          4..555 PP
3B350.63.6e-16413505196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+k++++ +v+ s  l +p +f ++h   ++ ++++tl++++g+ W+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+ + e
  Glyma.17G245900.2.p 413 FVKIMKKFNVSGSYTLKIPYQFSAAHL--PTYKTEVTLRNSRGECWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVAQCE 500
                          89999999***************9994..334569***************77666666799***********************987433 PP

                          E..EEEE CS
                   B3  90 felvvkv 96 
                            ++v +
  Glyma.17G245900.2.p 501 --MHVYI 505
                          ..46655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.761169IPR003340B3 DNA binding domain
SMARTSM010190.025169IPR003340B3 DNA binding domain
CDDcd100172.53E-13767No hitNo description
SuperFamilySSF1019363.73E-17774IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-16871IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-12868IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-20183281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-22183281IPR015300DNA-binding pseudobarrel domain
CDDcd100173.88E-19186280No hitNo description
SMARTSM010193.3E-10188284IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872188284IPR003340B3 DNA binding domain
PfamPF023622.9E-12188280IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-22405506IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-23406507IPR015300DNA-binding pseudobarrel domain
CDDcd100178.01E-20411505No hitNo description
SMARTSM010196.8E-13413509IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943413509IPR003340B3 DNA binding domain
PfamPF023621.1E-13413503IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MEGRTYGSVS LTGPSGKTWT VQLIKQENDL FLHHGWSTFV VDHQLECGEL LVFRYEGHLH  60
FTVQVFDKDA CEKEAAFHSE CSQSSKIMST NENQELELGV GKELLRYEIV RPISMFRENE  120
ETSKACSAND VPVPFHMDNS KEDEETAILY RSGKDDHRYI LSGVSLSNVS AHDEKKVSQS  180
FISSFPYFVR IMKSFNVSGS YTLNIPYQFS MAHLPNCKIK IILHNLKGEH WTVNSVPTTR  240
VHTSHTLCGG WMAFVRGNNI KVGDICIFEL VHECELRVRI AEVAKDGSDC QVGNLAITRP  300
SAGHAVTSRC MPMNPKVNSK CIRKVDLSDK KWSKIGQETI LSIDLKKSSR ASNTSKKMGL  360
CPQSKAAHKK LAAPRRHRVD DELSSQAKAG LRMLFALDEQ RVAQAFTSPF PSFVKIMKKF  420
NVSGSYTLKI PYQFSAAHLP TYKTEVTLRN SRGECWTVNS VPDAKGRTVH TFCGGWMAFV  480
RDNDINFGDT CIFELVAQCE MHVYISGVGK EGLDHQNGHL KLTNRLANVP STC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.205430.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G245900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549416.20.0B3 domain-containing protein Os01g0723500
RefseqXP_028211662.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A0R0FR810.0A0A0R0FR81_SOYBN; Uncharacterized protein
STRINGGLYMA17G36471.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-16B3 family protein