PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G246000.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 440aa    MW: 48991.4 Da    PI: 8.5426
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G246000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18351131197
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           +   l lpk f ++ +  k+ +  +tl+ + g +W++ +  + ++++ ++  GW++Fvk++ Lke+Df+vFk++g+s+f   v +f
  Glyma.17G246000.1.p  35 DQ--HLALPKAFSDNLK--KKLPENVTLKGPGGVVWNIGM--TTRDDTLYFVHGWEQFVKDHCLKENDFLVFKYNGESQF--DVLIF 113
                          33..389*****85544..558889***************..9999*****************************99999..77776 PP
2B339.51e-12311398494
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          v++ps+v k+  +++  + + +h ++  +s++++l+  +  +W  +++y++ ++   lt+GWk+F  +n+L+egD +vFk  g+++ ++v
  Glyma.17G246000.1.p 311 VMKPSHVYKRFFVSMRGTWIGKHISP--SSQDVILRMGK-GEWIARYSYNNIRNNGGLTGGWKHFSLDNNLEEGDACVFKPAGQMNNTFV 397
                          68899999999999999999888655..67789988855.58*******99999999***********************8887776666 PP

                          E CS
                   B3  94 v 94 
                          +
  Glyma.17G246000.1.p 398 I 398
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.47E-2220114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.2723116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-2225114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-2025114No hitNo description
SMARTSM010194.0E-1826116IPR003340B3 DNA binding domain
PfamPF023623.8E-1536113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-16307398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-13308398IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0026308406IPR003340B3 DNA binding domain
PfamPF023621.5E-10311398IPR003340B3 DNA binding domain
CDDcd100171.03E-12311404No hitNo description
PROSITE profilePS508639.319349406IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MVGQNCGGCR SWEEDIYWSH FQFLHFVQFL RADYDQHLAL PKAFSDNLKK KLPENVTLKG  60
PGGVVWNIGM TTRDDTLYFV HGWEQFVKDH CLKENDFLVF KYNGESQFDV LIFNGGSLCE  120
KAGSYFVRKC GHTGIEHAGG SLNKKRDTDN NSLEEGNIPP SNAGVECALH EKSVHANGTK  180
EPIDVPPETP PTEKTFNAGV ESSGVEQFTP DGGVTLVAVP SETANGKRIR NIVSAVKHVQ  240
TKRRGRPAKV HVRERTLDWV AALEASEPIS TSRSGTYEVY KSNRRPVTDD ETKMIESLAK  300
AACTEDSIYV VMKPSHVYKR FFVSMRGTWI GKHISPSSQD VILRMGKGEW IARYSYNNIR  360
NNGGLTGGWK HFSLDNNLEE GDACVFKPAG QMNNTFVIDM SIFRVVPETV PLTPMSRGTG  420
RRGRKQATMK SIQTQLSPP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.524900.0flower| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G246000.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982360.0BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601305.10.0B3 domain-containing protein REM16 isoform X1
TrEMBLA0A0R0FTB10.0A0A0R0FTB1_SOYBN; Uncharacterized protein
STRINGGLYMA17G36490.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Representative plantOGRP1491534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-48B3 family protein