PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G246000.2.p
Common NameGLYMA_17G246000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 408aa    MW: 45031.1 Da    PI: 9.2751
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G246000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-185811597
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         +l lpk f ++ +  k+ +  +tl+ + g +W++ +  + ++++ ++  GW++Fvk++ Lke+Df+vFk++g+s+f   v +f
  Glyma.17G246000.2.p  5 LLALPKAFSDNLK--KKLPENVTLKGPGGVVWNIGM--TTRDDTLYFVHGWEQFVKDHCLKENDFLVFKYNGESQF--DVLIF 81
                         6899****85444..558889***************..9999*****************************99999..77776 PP
2B339.78.9e-13279366494
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          v++ps+v k+  +++  + + +h ++  +s++++l+  +  +W  +++y++ ++   lt+GWk+F  +n+L+egD +vFk  g+++ ++v
  Glyma.17G246000.2.p 279 VMKPSHVYKRFFVSMRGTWIGKHISP--SSQDVILRMGK-GEWIARYSYNNIRNNGGLTGGWKHFSLDNNLEEGDACVFKPAGQMNNTFV 365
                          68899999999999999999888655..67789988855.58*******99999999***********************8887776666 PP

                          E CS
                   B3  94 v 94 
                          +
  Glyma.17G246000.2.p 366 I 366
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.439184IPR003340B3 DNA binding domain
SMARTSM010198.5E-12284IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-21582IPR015300DNA-binding pseudobarrel domain
PfamPF023626.7E-15581IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-21682IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-20682No hitNo description
Gene3DG3DSA:2.40.330.105.9E-16275366IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0026276374IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-13276366IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-13279372No hitNo description
PfamPF023621.3E-10279366IPR003340B3 DNA binding domain
PROSITE profilePS508639.319317374IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MINTLLALPK AFSDNLKKKL PENVTLKGPG GVVWNIGMTT RDDTLYFVHG WEQFVKDHCL  60
KENDFLVFKY NGESQFDVLI FNGGSLCEKA GSYFVRKCGH TGIEHAGGSL NKKRDTDNNS  120
LEEGNIPPSN AGVECALHEK SVHANGTKEP IDVPPETPPT EKTFNAGVES SGVEQFTPDG  180
GVTLVAVPSE TANGKRIRNI VSAVKHVQTK RRGRPAKVHV RERTLDWVAA LEASEPISTS  240
RSGTYEVYKS NRRPVTDDET KMIESLAKAA CTEDSIYVVM KPSHVYKRFF VSMRGTWIGK  300
HISPSSQDVI LRMGKGEWIA RYSYNNIRNN GGLTGGWKHF SLDNNLEEGD ACVFKPAGQM  360
NNTFVIDMSI FRVVPETVPL TPMSRGTGRR GRKQATMKSI QTQLSPP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.524900.0flower| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G246000.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982360.0BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025982291.10.0B3 domain-containing protein REM16 isoform X2
TrEMBLA0A0R0FI620.0A0A0R0FI62_SOYBN; Uncharacterized protein
STRINGGLYMA17G36490.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-33B3 family protein