PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G246000.3.p
Common NameGLYMA_17G246000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 405aa    MW: 44726.7 Da    PI: 9.142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G246000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.1e-183781697
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         + lpk f ++ +  k+ +  +tl+ + g +W++ +  + ++++ ++  GW++Fvk++ Lke+Df+vFk++g+s+f   v +f
  Glyma.17G246000.3.p  3 FALPKAFSDNLK--KKLPENVTLKGPGGVVWNIGM--TTRDDTLYFVHGWEQFVKDHCLKENDFLVFKYNGESQF--DVLIF 78
                         7899*9985444..558889***************..9999*****************************99999..77776 PP
2B339.78.8e-13276363494
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          v++ps+v k+  +++  + + +h ++  +s++++l+  +  +W  +++y++ ++   lt+GWk+F  +n+L+egD +vFk  g+++ ++v
  Glyma.17G246000.3.p 276 VMKPSHVYKRFFVSMRGTWIGKHISP--SSQDVILRMGK-GEWIARYSYNNIRNNGGLTGGWKHFSLDNNLEEGDACVFKPAGQMNNTFV 362
                          68899999999999999999888655..67789988855.58*******99999999***********************8887776666 PP

                          E CS
                   B3  94 v 94 
                          +
  Glyma.17G246000.3.p 363 I 363
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.227181IPR003340B3 DNA binding domain
SMARTSM010199.1E-10281IPR003340B3 DNA binding domain
PfamPF023621.2E-14378IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-20379IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-20479IPR015300DNA-binding pseudobarrel domain
CDDcd100178.04E-20579No hitNo description
Gene3DG3DSA:2.40.330.105.8E-16272363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-13273363IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0026273371IPR003340B3 DNA binding domain
CDDcd100175.96E-13276369No hitNo description
PfamPF023621.3E-10276363IPR003340B3 DNA binding domain
PROSITE profilePS508639.319314371IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MCFALPKAFS DNLKKKLPEN VTLKGPGGVV WNIGMTTRDD TLYFVHGWEQ FVKDHCLKEN  60
DFLVFKYNGE SQFDVLIFNG GSLCEKAGSY FVRKCGHTGI EHAGGSLNKK RDTDNNSLEE  120
GNIPPSNAGV ECALHEKSVH ANGTKEPIDV PPETPPTEKT FNAGVESSGV EQFTPDGGVT  180
LVAVPSETAN GKRIRNIVSA VKHVQTKRRG RPAKVHVRER TLDWVAALEA SEPISTSRSG  240
TYEVYKSNRR PVTDDETKMI ESLAKAACTE DSIYVVMKPS HVYKRFFVSM RGTWIGKHIS  300
PSSQDVILRM GKGEWIARYS YNNIRNNGGL TGGWKHFSLD NNLEEGDACV FKPAGQMNNT  360
FVIDMSIFRV VPETVPLTPM SRGTGRRGRK QATMKSIQTQ LSPP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.524900.0flower| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G246000.3.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982360.0BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025982291.10.0B3 domain-containing protein REM16 isoform X2
TrEMBLA0A0R0FI530.0A0A0R0FI53_SOYBN; Uncharacterized protein
STRINGGLYMA17G36490.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-33B3 family protein