PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G246200.1.p
Common NameGLYMA_17G246200, LOC100778242
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 332aa    MW: 36564.7 Da    PI: 7.5018
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G246200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.4e-32139192255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Glyma.17G246200.1.p 139 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 192
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15136193IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-28137193IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23139192IPR006447Myb domain, plants
PfamPF002492.1E-7140191IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MFTNSQTVMQ TLLSSPSAEP DLSLNISPPS ISDSEAAKDV VGSFGKVLYS DICSTSDSGS  60
SGGSDLSHEF HNLGHHHHRE PTLKLGFGTV DLNPHHHQVQ GVPRSFNHHH HLLQPHIYGR  120
DFKRSARVVN GVKRSVRAPR MRWTTTLHAH FVHAVQLLGG HERATPKSVL ELMNVKDLTL  180
AHVKSHLQMY RTVKSTDKGI STAGHGQTDI GLNPRLGINV HLHAPSPICD TPNLPDPIQN  240
SQRTPWQSSI ETKTDNSRQE EPEIGLTYSH LKGNNNNNET MVDGHNNSGG LDSSPLSRSS  300
EAMLDLEFTL GRPNWQKDHP ESSRELTLLK C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16140194458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16140194458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16140194357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16140194357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16140194357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16140194357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16140194458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16140194458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16140194458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16140194458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16140194458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16140194458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.202580.0cotyledon| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G246200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550354.10.0probable transcription factor KAN4
TrEMBLI1MXS70.0I1MXS7_SOYBN; Uncharacterized protein
STRINGGLYMA17G36500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.18e-68G2-like family protein