PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G007100.1.p
Common NameGLYMA_18G007100, LOC100793004
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 169aa    MW: 18971.6 Da    PI: 5.8811
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G007100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.32.5e-1614941897
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                         + e+P  r+kki+  d+dvk++s+ea  l+s++ elf+  l+ +s   a e+kr+t++   i +av+r + + dfl+d+ p
  Glyma.18G007100.1.p 14 QLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIREAVKRHQpTRDFLLDELP 94
                         779****************************************************************976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-211380IPR009072Histone-fold
SuperFamilySSF471132.1E-191582IPR009072Histone-fold
PfamPF008082.6E-191679IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVMAEEEESG VSIQLEFPKG RVKKIMALDK DVKRVSSEAL FLVSRSTELF LQFLAEKSAQ  60
VAIEKKRKTV NLEHIREAVK RHQPTRDFLL DELPPPSQPT KPDRPTQPAG RPKLDPPPRG  120
TRRIDLFFRK PELDDPAQAQ PPENPAQAQP PENPDQDQAQ SPVPVDES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.251690.0flower| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO102527360.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G007100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350907.11e-115dr1-associated corepressor-like
RefseqXP_028212206.11e-115dr1-associated corepressor-like
TrEMBLA0A445FMA31e-114A0A445FMA3_GLYSO; Uncharacterized protein
TrEMBLI1MYF91e-114I1MYF9_SOYBN; Uncharacterized protein
STRINGGLYMA18G01040.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Representative plantOGRP94721213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-48nuclear factor Y, subunit C13