PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G016700.1.p
Common NameGLYMA_18G016700, LOC100796506
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 339aa    MW: 37985.1 Da    PI: 7.0257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G016700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.5e-07145166223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C++Cgk F+r  nL+ H+r H
  Glyma.18G016700.1.p 145 FCEICGKGFRRDANLRMHMRAH 166
                          6*******************99 PP
2zf-C2H210.80.0015261277521
                          TTTEEESSHHHHHHHHH CS
              zf-C2H2   5 dCgksFsrksnLkrHir 21 
                           Cg++Fsrk+ L  Hi 
  Glyma.18G016700.1.p 261 TCGTTFSRKDKLFGHIA 277
                          6**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-6141166No hitNo description
PROSITE profilePS5015711.822144171IPR007087Zinc finger, C2H2
SMARTSM003550.0017144166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-6146168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035564191224IPR015880Zinc finger, C2H2-like
SMARTSM0035534229251IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSNSISDPTR IIHSQDPNTT ADPQVPLRNL SQVRNRMDSL QHFLSQSINT NTPLTVDQIA  60
MVSSQILSSI HQVIVNGAAL VSYSQNSIAA GAPDPPPYPK KPKPEPSVAD KAKQTLDSKL  120
EPLEGDDSEI VELDAVEILA EHMHFCEICG KGFRRDANLR MHMRAHGEQF KTAEALAKPS  180
EKASWLRATR FSCPFVGCNR NKLHRRFRPL KSVICVKNHF KRSHCPKMYT CERCRKKHFS  240
VLSDLRSHLK HCGGEARWKC TCGTTFSRKD KLFGHIALFE GHAPALACDS EGKGKQMVED  300
DEDPMLMSES GFELDDCFLD QEFPEGFFDD FGSIDDYC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.56350.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G016700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352150.0AC235215.1 Glycine max strain Williams 82 clone GM_WBb0020M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552051.10.0zinc finger protein STOP1 homolog
TrEMBLI1MYR40.0I1MYR4_SOYBN; Uncharacterized protein
STRINGGLYMA18G02010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-75C2H2 family protein