PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G024400.1.p

Common Name

GLYMA_18G024400, LOC100805733

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 166aa MW: 18471 Da PI: 5.9825

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G024400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144	4.6e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lq+q+++l Glyma.18G024400.1.p 6 PCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPAHQRGDAVSSLVYEAHARVRDPVYGCVGAISHLQNQVSEL 95 7*************************************************************************************** PP DUF260 91 kaelallkee 100 + +la++++e Glyma.18G024400.1.p 96 QMQLAVAQAE 105 ***99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.804	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-45	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MAGNSPCASC KLLRRRCTKD CIFAPYFPSN DPQKFALVHK VFGASNVSKM LQELPAHQRG 60 DAVSSLVYEA HARVRDPVYG CVGAISHLQN QVSELQMQLA VAQAEILCIQ MQQEPLMPNP 120 EMEDPDQKSY LLQNELPQYL NYASSSNVIY DSFSRESIFG HDMVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-48	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-48	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G024400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC236219	0.0	AC236219.2 Glycine max clone GM_WBc0096D17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003552226.1	1e-121	LOB domain-containing protein 12
Refseq	XP_028213424.1	1e-121	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	6e-70	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A445FN51	1e-119	A0A445FN51_GLYSO; LOB domain-containing protein 12
TrEMBL	I1MYZ7	1e-119	I1MYZ7_SOYBN; Uncharacterized protein
STRING	GLYMA18G02780.1	1e-120	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-72	LBD family protein

Link Out ? help Back to Top
Phytozome	Glyma.18G024400.1.p
Entrez Gene	100805733

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]