PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G025600.1.p
Common NameGLYMA_18G025600, LOC100791250
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 180aa    MW: 19897.8 Da    PI: 7.381
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G025600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.8e-39111101100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l
  Glyma.18G025600.1.p  11 SCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVEL 100
                          6***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++la +k++
  Glyma.18G025600.1.p 101 QHDLAIAKDR 110
                          ****999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.26510111IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3811108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKGYEPRSSS SCAACKLLKR RCIPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILIEVP  60
EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHDLAIAKDR LARCHAAAAA  120
ATTTIPSPDI LHANVSLPPF PDFCTSSSDF NDIFCHSSSS QLLGRHETVD DFNQIPYIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4461136113LOB family transfactor Ramosa2.1
5ly0_B2e-4461136113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.243980.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G025600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362190.0AC236219.2 Glycine max clone GM_WBc0096D17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552283.11e-131LOB domain-containing protein 21
RefseqXP_028212459.11e-131LOB domain-containing protein 21-like
SwissprotQ9SRL85e-63LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A445FN551e-129A0A445FN55_GLYSO; LOB domain-containing protein 21
TrEMBLI1MZ091e-129I1MZ09_SOYBN; Uncharacterized protein
STRINGGLYMA18G02910.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-64LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]