PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G036800.1.p
Common NameGLYMA_18G036800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 89aa    MW: 10438.7 Da    PI: 6.8052
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G036800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-071760344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT    +++ +a  ++  +   +W  Ia+++g +++ +++k ++
  Glyma.18G036800.1.p 17 SWTRLQNKQFEKALVLYDEHtrdRWQNIAKEVG-NKSVEEVKRHY 60
                         69999999999999999999999**********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.7221368IPR017884SANT domain
SMARTSM007174.1E-61466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-91567IPR009057Homeodomain-like
SuperFamilySSF466891.72E-111770IPR009057Homeodomain-like
CDDcd001671.64E-51760No hitNo description
PfamPF002497.3E-61860IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASNSLNNSN NKEHFPSWTR LQNKQFEKAL VLYDEHTRDR WQNIAKEVGN KSVEEVKRHY  60
AILLEDLSRM ESGRVPIPDY KFSENMDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-2018831176RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G036800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537461.11e-50protein RADIALIS-like 4
RefseqXP_028196777.11e-50protein RADIALIS-like 4
SwissprotQ1A1731e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A445FNQ79e-60A0A445FNQ7_GLYSO; Thaumatin-like protein
STRINGGLYMA18G04120.17e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-30RAD-like 6