PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G040700.2.p
Common NameGLYMA_18G040700, LOC100794413
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 256aa    MW: 29163.8 Da    PI: 4.123
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G040700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.8e-153351347
                         HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Glyma.18G040700.2.p  3 IDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 35
                         89********.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001674.86E-9136No hitNo description
PROSITE profilePS5129423.041140IPR017930Myb domain
SMARTSM007175.3E-6138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-18237IPR009057Homeodomain-like
SuperFamilySSF466893.74E-12245IPR009057Homeodomain-like
PfamPF002494.5E-12335IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVIDLHAQLG NRWSKIASHL PGRTDNEIKN HWNTHIKKKL KKMGIDPVTH KPLSNKTEET  60
QAQPDEQTHQ PLQEQQQQQH QHQQQPIPVE KDLKFEPEKE QNREPETSVE SSTITEEVKE  120
EDQIMTPLFD SWELMNEFCT DEAPIIEPNE ILVPSAPSSA SPTTTTISSS TSTSSYSNSS  180
NFLEDLLLPD LEWSDDYNDT NFDNNSSMAL WDDDFIGSWN SLINGDGDRK QVFDAPINQY  240
PSVIMDSDSW DYGLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G040700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5550561e-176FJ555056.1 Glycine max transcription factor MYB947 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553077.10.0transcription factor MYB20
TrEMBLA0A0R0EVW80.0A0A0R0EVW8_SOYBN; Uncharacterized protein
TrEMBLI1MZE80.0I1MZE8_SOYBN; Uncharacterized protein
STRINGGLYMA18G04580.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.12e-31myb domain protein 43