PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G042000.1.p
Common NameGLYMA_18G042000, LOC100813231
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27296.6 Da    PI: 10.4597
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G042000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57.3e-181050242
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         +i n+s r+ tf kR++g++KK +ELS+LC+++++ i++s+
  Glyma.18G042000.1.p 10 FIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSP 50
                         899*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.82149IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-25160IPR002100Transcription factor, MADS-box
CDDcd002663.62E-24285No hitNo description
SuperFamilySSF554552.88E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003197.9E-191051IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MTRKKVKLAF IANDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIVYSP YDPQPEVWPS  60
PMGVQRVLAK FRRMPELEQS KKMVNQESFL RQRIMKAKDQ LKKQRKDNRE KEMTQLMFQY  120
LSAGKIMHNI SMVDLNDLAW LIDQNLKDIN RRIEVLTKNA QSQPQIAAPA VTDVAAKVED  180
KGQGSQHGHQ GFDINMDLMQ KQNWFMNLMN NGGGGGNEAM PIVGDVNQQN GFWPNPFFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIANDSARKATFKKRK
22125KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G042000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552882.11e-179agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-66AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLI1MZG21e-178I1MZG2_SOYBN; Uncharacterized protein
STRINGGLYMA18G04760.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-69AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]