PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G042300.2.p

Common Name

GLYMA_18G042300, LOC100815175

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 252aa MW: 27631.7 Da PI: 6.6474

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G042300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Glyma.18G042300.2.p 98 FSCNYCKRKFFSSQALGGHQNAH 120 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.79E-6	95	125	No hit	No description
PROSITE profile	PS50157	11.323	98	125	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MKQHFDLEVV ASAEYESEVS SKVASNISIQ ETYAGPCSDN LTNSSNVTNP IELHLHSDAI 60 SLDLTLKFNN NDFSFSSTSE SSNGPLSQTN LAANPRVFSC NYCKRKFFSS QALGGHQNAH 120 KRERTIAKRA MRMGIFSERY ASLASLPFHG SFRSLGIKAH SSLHHGFSPT MRPPEMKSSA 180 RFEQGYVGLP IFLEEDEAEL LWQGSYHQVP SEGGHTHQNF TLSGSSNLSF VGSSLPPVDL 240 ENSTPELTLK L*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G042300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097031	0.0	BT097031.1 Soybean clone JCVI-FLGm-15J16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001242167.2	0.0	zinc finger protein 4-like
Refseq	XP_006601838.1	0.0	zinc finger protein 4-like isoform X1
Refseq	XP_006601840.1	0.0	zinc finger protein 4-like isoform X1
Refseq	XP_006601841.1	0.0	zinc finger protein 4-like isoform X1
Refseq	XP_006601842.1	0.0	zinc finger protein 4-like isoform X1
Swissprot	Q39263	2e-44	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	K7MPU5	0.0	K7MPU5_SOYBN; Uncharacterized protein
STRING	GLYMA18G04810.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	2e-44	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Glyma.18G042300.2.p
Entrez Gene	100815175

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]