PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G052800.1.p
Common NameGLYMA_18G052800, LOC106797065
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 268aa    MW: 30313 Da    PI: 7.4508
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G052800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81e-161051243
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         +i n+  r  t+ kR++g+lKK eELS+LC++e++ i+++++
  Glyma.18G052800.1.p 10 FIGNDAARRATYKKRKKGMLKKVEELSTLCGIEACAIVYGHN 51
                         799*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.077151IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-22294IPR002100Transcription factor, MADS-box
CDDcd002661.34E-18285No hitNo description
PRINTSPR004042.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MTRKKVKLAF IGNDAARRAT YKKRKKGMLK KVEELSTLCG IEACAIVYGH NDPEPEVWPS  60
HWGVQRVVEK LRTMPELEQR KKMVNQEGFI GQKILKGNEK VMKLMKDNRE KEITMFLFQC  120
LNAGRIQPDN NMTTADLNVL SSLIDQNLKD ISKRLETLSV NEMTPNQPLM QTPAYQPLVE  180
APSCNQSHLQ TPAYQPQTQT PALAVPKNEE MALLNYGHGL DMSDNSMQRL LFMDLLNSNG  240
DETIMPPFGD ANLQLQNDFW PDLGLLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIGNDAARRATYKKRK
22125KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G052800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014626257.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-49AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLK7MQ350.0K7MQ35_SOYBN; Uncharacterized protein
STRINGGLYMA18G05916.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1946255
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-46AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]