PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G053400.1.p

Common Name

GLYMA_18G053400, LOC100795996

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 230aa MW: 25807.2 Da PI: 4.8097

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G053400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.4	3.8e-18	10	52	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +i n++ r++++ kR++ +lKK eELS+LC++e++ i++++++ Glyma.18G053400.1.p 10 FIANDTERKTSYKKRKKSLLKKTEELSTLCGIEACAIVYGPDD 52 799*************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.9E-20	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.124	1	49	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.10E-17	2	85	No hit	No description
SuperFamily	SSF55455	1.83E-21	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-6	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-15	10	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-6	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MTRRKTKLTF IANDTERKTS YKKRKKSLLK KTEELSTLCG IEACAIVYGP DDPQPETWPS 60 EAGVKNVLGK FSTIPEWEQG KKMANQESFI AESIQKGRDK VKKIGKDNKE KEMTMFMYQC 120 FNTGTVHPDN NMAIADLNVL SSVIEQKLRD ISRRMETLNV NETTPQQPEM QTPALPVAPE 180 ETTTTPLNYG PDESDVNADP LESQWFMDLL NGNGDETPMT PFGDVNLPL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RRKTKLTFIANDTERKTSYKKRK
2	21	25	KKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:16798889}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G053400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003552918.1	1e-171	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	3e-43	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	K7MQ39	1e-169	K7MQ39_SOYBN; Uncharacterized protein
STRING	GLYMA18G05990.2	1e-170	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18238	5	6
Representative plant	OGRP114	13	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	6e-38	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Glyma.18G053400.1.p
Entrez Gene	100795996

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]