PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G053800.1.p

Common Name

GLYMA_18G053800, LOC100797590

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 191aa MW: 22227.7 Da PI: 10.2344

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G053800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.1	4.2e-17	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ +r++t+ kR+ng++KK +E+S+LC++e + ii+s++ Glyma.18G053800.1.p 11 ITNDPKRKTTLKKRKNGLMKKMNEISTLCGIESCAIIYSPN 51 899************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.442	1	51	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-20	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.88E-21	2	85	No hit	No description
PRINTS	PR00404	9.3E-9	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.11E-23	3	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-16	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MARKKLNLTY ITNDPKRKTT LKKRKNGLMK KMNEISTLCG IESCAIIYSP NDPQPEVWPS 60 DSGVQRVLSR FMEMSEVKQS RKMLNQENLL RQMINKGQQQ LTRQRNQNRK KEMTNLMFQY 120 LTAGKIFGNP SLVDLNDLSW LIDQNLNEIE KKITMLQIQE VTPVIENGEQ EHMHHVQGLE 180 SNMDTKQKKH *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKLNLTYITNDPKRKTTLKKRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:16798889}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G053800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003552921.1	1e-139	agamous-like MADS-box protein AGL80
Refseq	XP_028212215.1	1e-139	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	9e-46	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A0B2SV48	1e-138	A0A0B2SV48_GLYSO; Agamous-like MADS-box protein AGL80
TrEMBL	I1MZR3	1e-138	I1MZR3_SOYBN; Uncharacterized protein
STRING	GLYMA18G06040.1	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF452	33	154
Representative plant	OGRP114	13	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	8e-43	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Glyma.18G053800.1.p
Entrez Gene	100797590

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]