PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G066100.1.p
Common NameGLYMA_18G066100, LOC100785244
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 383aa    MW: 42165.1 Da    PI: 8.4986
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G066100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024144167123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          ++C+ Cg+ F  +++L+ H+ + H
  Glyma.18G066100.1.p 144 FPCTACGEIFQKPHLLEAHQTLkH 167
                          89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.369144168IPR007087Zinc finger, C2H2
PROSITE patternPS000280146167IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.109.0E-6170287IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563994.51E-13171381No hitNo description
Gene3DG3DSA:3.90.228.103.3E-5317381IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MASIATFFNK FLYFFILLVH LGCFIFTTAG KQSPPSKKRK TSPLSQPSSP SHTKFKTHKA  60
LSSSWHFIKH LFSTKSCKTP NTATTQSSPQ STATTTTTTA SAAAASSLIS LSQPDPDRNQ  120
PVSCPESGIS TDTNLFFPLR NDIFPCTACG EIFQKPHLLE AHQTLKHAVS DLPGSDPGHN  180
IVQIIFKSGW PESKPFPTIT RILKIHNSPK ILSKFEEYRE AVKSKAARHG AHTRRRDERC  240
IADGNELMRF HCSTFLCDLG HNGDSAICSQ QFCNICGIIK SGFSPKLDGI ATLSTSWRAH  300
VAIPEDIERE FRFMNVKRAM LVCRVIAGRV GSDSDEVEKE DGGFDSVMAS GESGVYTRLD  360
EEELLVFNPR AVLPCFVIVY SV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.205080.0cotyledon| hypocotyl| root| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G066100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552964.10.0uncharacterized protein LOC100785244
TrEMBLI1N0220.0I1N022_SOYBN; Uncharacterized protein
STRINGGLYMA18G07330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Representative plantOGRP96611112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-107C2H2 family protein