PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G079800.1.p
Common NameGLYMA_18G079800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 117aa    MW: 13528.6 Da    PI: 10.2193
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G079800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.38.6e-119105295
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE-SS.S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGW.keFvkangLkegDfvvFkldgr.s 88 
                          +k lt+sd ++++rl lpkk +e+  ++  +++++t+ d + +s+   + +++ +s++yv+ ++W keFv+   L+ +D + F+ ++  +
  Glyma.18G079800.1.p   9 KKLLTKSDLGNLSRLLLPKKSIEDLVLPVLSGTKITIWDVDTQSMHYLVfKFWVSSRSYVFIDNWtKEFVNRRSLQINDEIGFHWNSYkN 98 
                          5889*********************88889999******9999998766366************9668****************776656 PP

                          EE..EEE CS
                   B3  89 efelvvk 95 
                          +f + v 
  Glyma.18G079800.1.p  99 QFDFSVL 105
                          6655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-158104IPR015300DNA-binding pseudobarrel domain
CDDcd100176.27E-168105No hitNo description
Gene3DG3DSA:2.40.330.103.3E-159111IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-810104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MKKTDIGIKK LLTKSDLGNL SRLLLPKKSI EDLVLPVLSG TKITIWDVDT QSMHYLVFKF  60
WVSSRSYVFI DNWTKEFVNR RSLQINDEIG FHWNSYKNQF DFSVLARASS ARDQTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G079800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028214837.18e-71B3 domain-containing protein At2g33720-like
TrEMBLK7MQK86e-79K7MQK8_SOYBN; Uncharacterized protein
STRINGGLYMA18G08885.19e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Representative plantOGRP782034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.15e-20B3 family protein