PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G081200.2.p
Common NameGLYMA_18G081200, LOC100781491
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 552aa    MW: 59438.5 Da    PI: 6.2686
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G081200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.5e-32197254260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Glyma.18G081200.2.p 197 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 254
                          8****************************************.***************85 PP
2WRKY105.82.3e-33371429159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.18G081200.2.p 371 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHD 429
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.617191255IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-27192255IPR003657WRKY domain
SuperFamilySSF1182904.32E-25194255IPR003657WRKY domain
SMARTSM007744.1E-34196254IPR003657WRKY domain
PfamPF031061.6E-24197253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37356431IPR003657WRKY domain
SuperFamilySSF1182902.09E-29363431IPR003657WRKY domain
PROSITE profilePS5081138.664366431IPR003657WRKY domain
SMARTSM007743.5E-39371430IPR003657WRKY domain
PfamPF031064.1E-26372429IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MDAGEALSDD PNRPNSAADA APATAGARYK LMSPAKLPIS RSPCVTIPPG LSPTSFLESP  60
VLLSNMKVEP SPTTGSLSLL HQTAHGSVTS AASSTFPVTT VPADFDNHAS EKSTQIDGQG  120
KAQAFDSSPL VKNESASPSN ELSLSSPVQM DCSGGSARVE GDLDELNPRS NITTGLQASQ  180
VDNRGSGLSV AADRVSDDGY NWRKYGQKHV KGSEFPRSYY KCTHPNCEVK KLFERSHDGQ  240
ITEIIYKGTH DHPKPQPNRR YSAGTIMSVQ EERSDKVSLT SRDGNGSYMC GQGSHLAEPD  300
SQPELSPVAT NDGDLDGLGV LSNRNNDEVD DDDPFSKRRK MDLGIADITP VVKPIREPRV  360
VVQTLSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTNT GCPVRKHVER ASHDPKAVIT  420
TYEGKHNHDV PTARNSCHDM AGPASASGQT RIRPEESDTI SLDLGMGISP AAENTPNSQG  480
RMMLSEFGDS QTHTSNSNFN FVHTTTVPGY FGVLNNNSNP YGSRENPSDG PSLNHSAYPC  540
PQNIGRILMG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36197431877Probable WRKY transcription factor 4
2lex_A1e-36197431877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.262430.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G081200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5203900.0KM520390.1 Macrotyloma uniflorum WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602159.10.0probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLK7MQL90.0K7MQL9_SOYBN; Uncharacterized protein
STRINGGLYMA18G09040.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-178WRKY family protein