PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G081200.3.p
Common NameGLYMA_18G081200, LOC100781491
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 403aa    MW: 44210.6 Da    PI: 6.6247
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G081200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.1e-3248105260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Glyma.18G081200.3.p  48 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 105
                          8****************************************.***************85 PP
2WRKY106.41.4e-33222280159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.18G081200.3.p 222 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHD 280
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.61742106IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.9E-2843106IPR003657WRKY domain
SuperFamilySSF1182902.75E-2545106IPR003657WRKY domain
SMARTSM007744.1E-3447105IPR003657WRKY domain
PfamPF031061.0E-2448104IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-38207282IPR003657WRKY domain
SuperFamilySSF1182901.31E-29214282IPR003657WRKY domain
PROSITE profilePS5081138.664217282IPR003657WRKY domain
SMARTSM007743.5E-39222281IPR003657WRKY domain
PfamPF031062.6E-26223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDCSGGSARV EGDLDELNPR SNITTGLQAS QVDNRGSGLS VAADRVSDDG YNWRKYGQKH  60
VKGSEFPRSY YKCTHPNCEV KKLFERSHDG QITEIIYKGT HDHPKPQPNR RYSAGTIMSV  120
QEERSDKVSL TSRDGNGSYM CGQGSHLAEP DSQPELSPVA TNDGDLDGLG VLSNRNNDEV  180
DDDDPFSKRR KMDLGIADIT PVVKPIREPR VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP  240
NPRSYYKCTN TGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPTARNSCHD MAGPASASGQ  300
TRIRPEESDT ISLDLGMGIS PAAENTPNSQ GRMMLSEFGD SQTHTSNSNF NFVHTTTVPG  360
YFGVLNNNSN PYGSRENPSD GPSLNHSAYP CPQNIGRILM GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-3748282877Probable WRKY transcription factor 4
2lex_A5e-3748282877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.262430.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G081200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5203900.0KM520390.1 Macrotyloma uniflorum WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602159.10.0probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV01e-153WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLK7MQL90.0K7MQL9_SOYBN; Uncharacterized protein
STRINGGLYMA18G09040.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-156WRKY family protein