PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G117100.3.p
Common NameGLYMA_18G117100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 317aa    MW: 34437.5 Da    PI: 4.9716
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G117100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.11.2e-15236297162
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          +ke+kr +r+ +NR++A+  R+RKka++  Le++vk Le++N++Lk++l++l++e + l++ 
  Glyma.18G117100.3.p 236 DKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQI 297
                          689******************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.07E-292099No hitNo description
Gene3DG3DSA:3.30.40.109.0E-2722102IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF145694.9E-322595IPR027934Cellulose synthase, RING-type zinc finger
PROSITE profilePS500899.2292975IPR001841Zinc finger, RING-type
SMARTSM003385.0E-17236300IPR004827Basic-leucine zipper domain
PfamPF001705.5E-14237298IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.702238301IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-16240300No hitNo description
SuperFamilySSF579595.13E-13240298No hitNo description
CDDcd147042.35E-21241292No hitNo description
PROSITE patternPS000360243258IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MERSGGMVTG SHERNELVRV RHGSDSGICQ ICGDTIGLTA TGDLFVACHE CGFPLCHSCY  60
EYELKNVSQS CPQCKTTFTS RQEGAEVEGD DDDEDDADDL DNGINYGQGN NSKSGMLWEE  120
DADLSSSSGH DSHIPNPHLV NGQPMSGEFP CATSDAQSMQ TTSDPMGQSE KVHSLPYADP  180
KQPGPESDEE IRRVPEIGGE SAGTSASRPD AGSNAGTERA QGTGDSQKKR GRSPADKESK  240
RLKRLLRNRV SAQQARERKK AYLIDLETRV KDLEKKNSEL KERLSTLQNE NQMLRQILKN  300
TTASRRGSNS GTNNAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1weo_A3e-1925781568cellulose synthase, catalytic subunit (IRX3)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.85360.0cotyledon| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G117100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSOYSTF1A0.0L28003.1 Glycine max TGACG-motif binding protein (STF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601864.10.0bZIP transcription factor bZIP36 isoform X1
RefseqXP_028212261.10.0cellulose synthase A catalytic subunit 1 [UDP-forming]-like isoform X2
TrEMBLK7MRF60.0K7MRF6_SOYBN; Uncharacterized protein
STRINGGLYMA18G14750.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.16e-58bZIP family protein
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Cheong YH, et al.
    STF1 is a novel TGACG-binding factor with a zinc-finger motif and a bZIP domain which heterodimerizes with GBF proteins.
    Plant J., 1998. 15(2): p. 199-209
    [PMID:9721678]