PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G126800.2.p
Common NameGLYMA_18G126800, LOC100804328
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 250aa    MW: 28686.3 Da    PI: 8.3347
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G126800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-1783134556
                          SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++t+eq++ L++ Fe ++++  e++ +LAk+lg++ rqV +WFqNrRa+ k
  Glyma.18G126800.2.p  83 RRLTSEQVQFLQSNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFK 134
                          479***********************************************98 PP
2HD-ZIP_I/II122.32.4e-3981172293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          k rrl++eqv++L ++Fe e+kLeperKv+la+eLg+qprqva+WFqnrRAR+ktkqlE+dy +Lk++y  lk++ ++L +e+++L+ee+
  Glyma.18G126800.2.p  81 KTRRLTSEQVQFLQSNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLETDYGMLKASYHVLKRDYDNLLQENDKLKEEV 170
                          789************************************************************************************999 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  Glyma.18G126800.2.p 171 NS 172
                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-1870138IPR009057Homeodomain-like
PROSITE profilePS5007116.0576136IPR001356Homeobox domain
CDDcd000863.26E-1479137No hitNo description
SMARTSM003894.0E-1679140IPR001356Homeobox domain
PfamPF000464.4E-1583134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-1983143IPR009057Homeodomain-like
PRINTSPR000316.8E-6107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000316.8E-6116132IPR000047Helix-turn-helix motif
PfamPF021832.9E-16136175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAGQKLHGGS SMTLLLQKER LPCSPELIQS FCFQNSEPSF QGSKSMANVV NVTHRPFFQG  60
PEKEENGNDA DFEVCLHQPG KTRRLTSEQV QFLQSNFEVE NKLEPERKVQ LAKELGMQPR  120
QVAIWFQNRR ARFKTKQLET DYGMLKASYH VLKRDYDNLL QENDKLKEEV NSLNRLIPRE  180
QEEQNSDDTS CDTVNSRHKE HKEHKDLIIN TGSENGSEVP LPVKIPPMLW NQTTQISRKM  240
KKTSSAKTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARFKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G126800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602336.10.0homeobox-leucine zipper protein HAT5 isoform X3
SwissprotQ022831e-42HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0R0EZD20.0A0A0R0EZD2_SOYBN; Uncharacterized protein
STRINGGLYMA18G16390.21e-166(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-45homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]