PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G132400.1.p
Common NameGLYMA_18G132400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 204aa    MW: 23403.7 Da    PI: 8.7768
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G132400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.42e-121194189
                 FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                         ++Y++YA+ +G+ + k ++k+  ++g  +  t+ Cs+  k  +++k+     +++  t+ +Ck +lk  ++ d++  v++++leHnHel
  Glyma.18G132400.1.p 11 NYYKNYAQCLGYGIGKISTKNG-DDG-KKYFTLACSRARKYVSNSKN---LLKPNRITKSQCKGRLKACMSLDETVIVSSVVLEHNHEL 94
                         69************99987766.444.6889*********9999988...8999**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-91195IPR004330FAR1 DNA binding domain
PfamPF105515.7E-7177203IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MIFSSEDEIT NYYKNYAQCL GYGIGKISTK NGDDGKKYFT LACSRARKYV SNSKNLLKPN  60
RITKSQCKGR LKACMSLDET VIVSSVVLEH NHELIVEANG YENLTFGEKD CRNYIGKVRR  120
LRLGTGDAKA IQNYFVRMQK QNSLFYYVMD MDDKSCLQNV LWVDTRCRAA YEYFGEIITF  180
DTTYLTNKYD MPFTPFVGVN HHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G132400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351880.0AC235188.1 Glycine max strain Williams 82 clone GM_WBb0010N12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642129.11e-106protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A0R0EZI81e-151A0A0R0EZI8_SOYBN; Uncharacterized protein
STRINGXP_004496070.12e-93(Cicer arietinum)
STRINGAES884262e-95(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.28e-32FAR1-related sequence 4