PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G143800.1.p
Common NameGLYMA_18G143800, LOC100784161
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20722.8 Da    PI: 9.1832
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G143800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF663.9e-211257449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         ++   rqvtfskRr+g++KKA+ELS+LC++e+a+++fs  +k y +
  Glyma.18G143800.1.p 12 KDPNTRQVTFSKRRTGLFKKANELSILCGVEIAIVVFSIGNKPYSF 57
                         56678*********************************98887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.32E-26173IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.553161IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-19323IPR002100Transcription factor, MADS-box
PfamPF003197.9E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGRRKIQIAV VKDPNTRQVT FSKRRTGLFK KANELSILCG VEIAIVVFSI GNKPYSFGHP  60
SVDVVVTKFL QHATNSNDAL GSNNSSNEVV GDMERLNQQL SDLQTQILEE EIKGTKHDER  120
LKQHEVTQVF QYKELQGLCL ELQRKVKDYV DEIEVSECML LLAQEPVVGV RKEVITKKRR  180
KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-18173173MEF2 CHIMERA
6byy_B1e-18173173MEF2 CHIMERA
6byy_C1e-18173173MEF2 CHIMERA
6byy_D1e-18173173MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176180KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G143800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551226.11e-132agamous-like MADS-box protein AGL29
TrEMBLI1N1K61e-130I1N1K6_SOYBN; Uncharacterized protein
STRINGGLYMA18G20830.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-36AGAMOUS-like 29