PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G145400.1.p
Common NameGLYMA_18G145400, LOC100798992
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 251aa    MW: 27267.6 Da    PI: 7.711
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G145400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.74.4e-3156109458
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                           +Y+eClkNhA+ +Ggha+DGC Ef+p+ geegt +alkCaAC+CHRnFHR+e+ 
  Glyma.18G145400.1.p  56 GKYQECLKNHAVGIGGHALDGCAEFLPA-GEEGTLDALKCAACNCHRNFHRKETP 109
                          58*************************9.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2252108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.9E-2957107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.7E-2957108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.94458107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.2E-20176248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-32177249IPR009057Homeodomain-like
TIGRFAMsTIGR015657.8E-26187243IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEFQEHHVEA ELGMPAAAAS YEEFGMPPNH GQEEPVVAAV PVPPPANTMA RNSGKGKYQE  60
CLKNHAVGIG GHALDGCAEF LPAGEEGTLD ALKCAACNCH RNFHRKETPD GTYLLPFHHR  120
HQPPPPPFAP YYRAPAGYLH MTGPQHATLA LPSTSGGGGT QSPREDQGDL SDPPTSGATT  180
HGGSSSKKRF RTKFTQQQKD KMLAFAEKLG WRIQKHDEGV VQEFCSETGV QRHVLKVWMH  240
NNKHTLGKKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-271862451675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G145400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351510.0AC235151.1 Glycine max strain Williams 82 clone GM_WBa0085A21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551238.10.0zinc-finger homeodomain protein 2
RefseqXP_028213624.10.0zinc-finger homeodomain protein 2-like
SwissprotQ6YXH51e-75ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A445FTA40.0A0A445FTA4_GLYSO; Zinc-finger homeodomain protein 1
TrEMBLK7MS540.0K7MS54_SOYBN; Uncharacterized protein
STRINGGLYMA18G21520.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-63homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]