PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G150800.1.p

Common Name

GLYMA_18G150800, LOC102663483

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 370aa MW: 39887.4 Da PI: 9.0702

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G150800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.3	1.7e-38	31	90	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ +kcprCds+ntkfCyynnysl+qPr+fCk+CrryWt+GGalr vP+Ggg+rknk++ Glyma.18G150800.1.p 31 PEQGVKCPRCDSSNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRSVPIGGGCRKNKRA 90 67899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	29	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-32	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.05	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MVPPPENMAA PKDQDATQGR KITTTTTRPA PEQGVKCPRC DSSNTKFCYY NNYSLTQPRH 60 FCKTCRRYWT NGGALRSVPI GGGCRKNKRA VVKPSSSSSS SSPRLSTTEF SLRGLNVPPS 120 VEFNLGALPF PSRLNTNHHI PTIINTGLFN NNQLSPFLDV KSALFQLDAP PAALSNSLMG 180 IAPPSAQNNN FWALGRSQSS TLSDPLNSTM QSMQQSLNVH SSLASSIESL SCVNRDLHLK 240 MQQQRYATMM SGGDTHHKGD ENSGVSFPQT VNGFENQKLV MNPVMFQKPV ESLPAGSAVT 300 EGPSGASVTT VAPPTEWFFG NSSFPSTGNG GGNGNNNINI NINDANNNWS DALAWGNFQQ 360 QQQQYSALP*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MVPPPENMAA PKDQDATQGR KITTTTTRPA PEQGVKCPRC DSSNTKFCYY NNYSLTQPRH  60
FCKTCRRYWT NGGALRSVPI GGGCRKNKRA VVKPSSSSSS SSPRLSTTEF SLRGLNVPPS  120
VEFNLGALPF PSRLNTNHHI PTIINTGLFN NNQLSPFLDV KSALFQLDAP PAALSNSLMG  180
IAPPSAQNNN FWALGRSQSS TLSDPLNSTM QSMQQSLNVH SSLASSIESL SCVNRDLHLK  240
MQQQRYATMM SGGDTHHKGD ENSGVSFPQT VNGFENQKLV MNPVMFQKPV ESLPAGSAVT  300
EGPSGASVTT VAPPTEWFFG NSSFPSTGNG GGNGNNNINI NINDANNNWS DALAWGNFQQ  360
QQQQYSALP*

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	22927303	4e-64

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G150800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-56	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006603380.1	0.0	dof zinc finger protein DOF5.7
TrEMBL	K7MSC7	0.0	K7MSC7_SOYBN; Uncharacterized protein
STRING	GLYMA18G26870.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	3e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.18G150800.1.p
Entrez Gene	102663483