PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G154100.1.p

Common Name

GLYMA_18G154100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 220aa MW: 24850.3 Da PI: 8.3635

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G154100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.3	4.1e-26	48	137	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k e+++r++ r gCka++ vk ek+gkw vt+++++HnH+l Glyma.18G154100.1.p 48 KFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNNKGILGPEKKPRPSAREGCKATILVKFEKSGKWIVTRFVKDHNHPLI 137 6******************************************999**************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-24	48	137	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MDSVVVDSDK GNEAEHSCLE ESISIFGGVE VQEPYVGMEF GSEEDARKFY VDYARRVGFV 60 VRIMQRRRSG IDGRTLARRL GCNKQGFSPN NKGILGPEKK PRPSAREGCK ATILVKFEKS 120 GKWIVTRFVK DHNHPLIATA NGFSTAGDKD KKIVELTMEL ERQDQLCAAY REKLLSFISN 180 VEEETEELST KIQLIIENVR RAESDMKKCS QNRKPWCLT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G154100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020206718.1	1e-151	protein FAR1-RELATED SEQUENCE 7 isoform X1
TrEMBL	K7MSA6	1e-161	K7MSA6_SOYBN; Uncharacterized protein
STRING	GLYMA18G24443.1	1e-162	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	2e-75	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Glyma.18G154100.1.p