PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G154100.2.p

Common Name

GLYMA_18G154100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 183aa MW: 20912.1 Da PI: 10.171

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G154100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.9	2.6e-26	11	100	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k e+++r++ r gCka++ vk ek+gkw vt+++++HnH+l Glyma.18G154100.2.p 11 KFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNNKGILGPEKKPRPSAREGCKATILVKFEKSGKWIVTRFVKDHNHPLI 100 6******************************************999**************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-24	11	100	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEFGSEEDAR KFYVDYARRV GFVVRIMQRR RSGIDGRTLA RRLGCNKQGF SPNNKGILGP 60 EKKPRPSARE GCKATILVKF EKSGKWIVTR FVKDHNHPLI ATANGFSTAG DKDKKIVELT 120 MELERQDQLC AAYREKLLSF ISNVEEETEE LSTKIQLIIE NVRRAESDMK KCSQNRKPWC 180 LT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G154100.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020206717.1	1e-125	protein FAR1-RELATED SEQUENCE 12 isoform X2
Refseq	XP_020206718.1	1e-125	protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9SZL8	9e-20	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	K7MSA6	1e-132	K7MSA6_SOYBN; Uncharacterized protein
TrEMBL	K7MSA7	1e-132	K7MSA7_SOYBN; Uncharacterized protein
STRING	GLYMA18G24443.1	1e-133	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	2e-70	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Glyma.18G154100.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]