PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G155000.1.p
Common NameGLYMA_18G155000, LOC100819782
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 345aa    MW: 39761.3 Da    PI: 10.7532
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G155000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.6e-2016106198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk+ t ++v++ g l++p+kf++++g+  + + tl l++++g +W++ l  +k++g+++++kGWkeF++ + L  g  +vF+ d +s f
  Glyma.18G155000.1.p  16 FFKIITAHNVHE-GKLMIPNKFVKKYGK--RLQNTLFLKTPNGAEWKMIL--KKRDGKIWFQKGWKEFAEYHSLAHGHLLVFRWDVTSHF 100
                          788886655555.56***********94..5888****************..*******************************6655666 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v++f+
  Glyma.18G155000.1.p 101 --QVHIFD 106
                          ..999997 PP
2B369.35.1e-22213311199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f++v+ + + +++g l lp kf+++h ++ k + + ++l+ +sgr W  k+++ k++ ++ ++  W+ Fvk+n+Lk+gD+++F+l++ ++
  Glyma.18G155000.1.p 213 FLTVMHRTHISSHGSLNLPMKFCRSHlDLHK-KRRLISLQVLSGRIWPAKYQIHKQKTAIRFKLSWNAFVKDNNLKVGDVCIFELVHGTK 301
                          778888899999**************85554.5569***************999999999999***********************99** PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                           +++v++fr+
  Glyma.18G155000.1.p 302 LTFLVHIFRE 311
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-2613115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-2614107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-2215106No hitNo description
PROSITE profilePS5086314.01515108IPR003340B3 DNA binding domain
SMARTSM010191.7E-2016108IPR003340B3 DNA binding domain
PfamPF023621.6E-1716106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-23204312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-24208312IPR015300DNA-binding pseudobarrel domain
CDDcd100178.35E-25211310No hitNo description
SMARTSM010196.0E-18213312IPR003340B3 DNA binding domain
PROSITE profilePS5086314.283213312IPR003340B3 DNA binding domain
PfamPF023621.8E-20213311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAATFPQQLL VKPIHFFKII TAHNVHEGKL MIPNKFVKKY GKRLQNTLFL KTPNGAEWKM  60
ILKKRDGKIW FQKGWKEFAE YHSLAHGHLL VFRWDVTSHF QVHIFDLSAL EIEYPTEIIK  120
GKTASNRKGN ESPGDEHLEC HRSGQKRKVN SVEFLQQCQM RSRKCVKVEN TMILPRQALH  180
HTATKCKGKS KAMDNQVTAL DRASSFKSCN PFFLTVMHRT HISSHGSLNL PMKFCRSHLD  240
LHKKRRLISL QVLSGRIWPA KYQIHKQKTA IRFKLSWNAF VKDNNLKVGD VCIFELVHGT  300
KLTFLVHIFR ETDSSNCSTS QESGQMRAAC QSQRKELKTI TATK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.441990.0pod| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G155000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551329.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_028213212.10.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A0B2Q6840.0A0A0B2Q684_GLYSO; B3 domain-containing transcription factor VRN1
TrEMBLK7MSG40.0K7MSG4_SOYBN; Uncharacterized protein
STRINGGLYMA18G30790.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-35B3 family protein