PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G155000.4.p
Common NameGLYMA_18G155000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 244aa    MW: 27784.3 Da    PI: 10.758
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G155000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22112210199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f++v+ + + +++g l lp kf+++h ++ k + + ++l+ +sgr W  k+++ k++ ++ ++  W+ Fvk+n+Lk+gD+++F+l++ ++
  Glyma.18G155000.4.p 112 FLTVMHRTHISSHGSLNLPMKFCRSHlDLHK-KRRLISLQVLSGRIWPAKYQIHKQKTAIRFKLSWNAFVKDNNLKVGDVCIFELVHGTK 200
                          778888999999**************85554.5569***************999999999999***********************99** PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                           +++v++fr+
  Glyma.18G155000.4.p 201 LTFLVHIFRE 210
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-24103211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-25107211IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-25110209No hitNo description
SMARTSM010196.0E-18112211IPR003340B3 DNA binding domain
PfamPF023628.5E-21112210IPR003340B3 DNA binding domain
PROSITE profilePS5086314.283112211IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVSKGMERVC RVSLSSSWPS FGFQMGCNFS FSGDEHLECH RSGQKRKVNS VEFLQQCQMR  60
SRKCVKVENT MILPRQALHH TATKCKGKSK AMDNQVTALD RASSFKSCNP FFLTVMHRTH  120
ISSHGSLNLP MKFCRSHLDL HKKRRLISLQ VLSGRIWPAK YQIHKQKTAI RFKLSWNAFV  180
KDNNLKVGDV CIFELVHGTK LTFLVHIFRE TDSSNCSTSQ ESGQMRAACQ SQRKELKTIT  240
ATK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.441990.0pod| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G155000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551329.11e-154B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_014625797.11e-154B3 domain-containing transcription factor VRN1 isoform X2
RefseqXP_028213212.11e-154B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_028213213.11e-154B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A0R0F0I31e-180A0A0R0F0I3_SOYBN; Uncharacterized protein
STRINGGLYMA18G30790.11e-153(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-12B3 family protein