PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G156900.1.p
Common NameGLYMA_18G156900, LOC100787699
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 581aa    MW: 62983 Da    PI: 6.5655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G156900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.9e-09390437455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Glyma.18G156900.1.p 390 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 437
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17384455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-10384441No hitNo description
Gene3DG3DSA:4.10.280.101.4E-16386454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663386436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6390437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10392442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MENQFFLNAG VPPQLHFEPS PHGHQPCPPP SWQSSLSSAM DVQVTVLNCS TEQTQDCFYN  60
TTPTWDKSTD HGLQFDSALS SMVSSPAASN SNISSENFVI RELIGKLGNI GGGGGSDEIS  120
PHSQPLVGAS FYINCNNNST NTSCYSTPLS SPPKVNTIKI PTMVNHLVKE GMPPSLETPM  180
SLNSTVAKFS ADPGFAERAA KFSCFGSRSL NGRTTQLGLN NAELAQRSSL VENGKRLPRV  240
SSSPSLKVLE SQMGTQENKN SPLQDLMELA NSQEESTISE QTPNGDTGVK PSPYVNSRKR  300
KGPSKGKAKE TSASINPPMA AEASEDWNAK RSKPNAGEGN ENGQVKAEEE SKGGNSNAND  360
EKQNKSNSKP PEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT  420
GKALMLDEII NYVQSLQRQV EFLSMKLASV NTRLDFSIES LISKDIFQSN NSLAHPIFLI  480
DSSAPPFYGQ HPQPNPAVHN NIPNGTMTHN SVDPLDTGLC QNLGMHLPHL NDFNEGGSQY  540
AKPFSEDDLH TIIQMGFGQN ANRITPIQSQ SFNGSNQVPL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.610430.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G156900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311130.0KT031113.1 Glycine max clone HN_CCL_101 bHLH transcription factor (Glyma08g46040.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602463.10.0transcription factor bHLH62 isoform X1
TrEMBLI1N1Y20.0I1N1Y2_SOYBN; Uncharacterized protein
STRINGGLYMA18G32560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.17e-94bHLH family protein