PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G178700.1.p

Common Name

GLYMA_18G178700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 315aa MW: 36813.1 Da PI: 5.2757

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G178700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.5	5.1e-14	106	177	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 +fY+ YA+ Fs+rks+ + ++ge+ ++tfvCskeg+r+++ + ++++++ ++ tr+gCk ++v+ ++ Glyma.18G178700.1.p 106 QFYKWYARANDFSIRKSHALIN-KKGETLQQTFVCSKEGYRQDRGLSpQNRKHEYKNFTRCGCKVYIRVHVNE 177 6**************99998.6777***************99866777778999999999999998874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-11	106	177	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MEEHSIRDCS NDGTFEDVHM EDDGVDLRMM SLVSKIKNMC RWNEDGLDDN ECFENNVLDD 60 NELKDEEDCD NEVLNDEGYH ETILEDGVEY VVEINDANPL MINGYQFYKW YARANDFSIR 120 KSHALINKKG ETLQQTFVCS KEGYRQDRGL SPQNRKHEYK NFTRCGCKVY IRVHVNELTD 180 RCGGHKHKLL NEQDCGLLSG HRKITATDAM QIENYRKVVI RPPHIYASLA QTSGGYNKVG 240 YVRKDIYNYF ARQGHEQSYD VIRALNYFHH LCSKDPMMDD ENRLQHLFWC DANSRMNYVV 300 FGDVLAFDET YMKK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G178700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235915	1e-174	AC235915.2 Glycine max clone GM_WBc0232C06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014626148.1	1e-174	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0R0F1A4	0.0	A0A0R0F1A4_SOYBN; Uncharacterized protein
STRING	GLYMA18G38935.1	1e-177	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3265	7	34
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-19	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Glyma.18G178700.1.p