PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G179300.1.p
Common NameGLYMA_18G179300, LOC102663963
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 211aa    MW: 24182.1 Da    PI: 8.8237
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G179300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-20766357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+++t+eql +Leel+++  r+psa+++++++++l    +++ ++V++WFqN++a++++
  Glyma.18G179300.1.p  7 SRWSPTTEQLMILEELYRSgIRTPSASQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 66
                         7*****************99*************************************996 PP
2Wus_type_Homeobox118.13.9e-38667364
    Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         ++RW+Pt+eQ++iLeely+sG+rtP++++iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk
  Glyma.18G179300.1.p  6 SSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67
                         79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.592267IPR001356Homeobox domain
SMARTSM003894.5E-4471IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-8766IPR009057Homeodomain-like
SuperFamilySSF466893.89E-11766IPR009057Homeodomain-like
PfamPF000465.7E-18766IPR001356Homeobox domain
CDDcd000864.32E-4867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSPAGSSRWS PTTEQLMILE ELYRSGIRTP SASQIQQITT HLSFYGRIEG KNVFYWFQNH  60
KARDRQKLRR KLTKQLQLQQ QQQQQQFQLH HHCQQLNQDH ITNHFVGSFG YSTARSTTHD  120
FSFFNSPSLI FQGGAANTPE QALSCKWNVH NPQSNLVENK EMAFCNYGWT LVDVDNQASS  180
CCTTRPLKTL DLFPLTTTRI NEDCTATPPK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G179300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-102AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602580.11e-158WUSCHEL-related homeobox 3
TrEMBLK7MT211e-156K7MT21_SOYBN; Uncharacterized protein
STRINGGLYMA18G39520.21e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Representative plantOGRP55801121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.18e-36WOX family protein