PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G181100.2.p
Common NameLOC778081
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 560aa    MW: 61582.9 Da    PI: 8.483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G181100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.1e-1660106148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT++Ede l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Glyma.18G181100.2.p  60 KGGWTAQEDETLRNAVAVFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 106
                          688*****************************.************986 PP
2Myb_DNA-binding62.67.7e-20112158148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd+++v++v ++G+  W++Ia+ ++ gR +kqc++rw+++l
  Glyma.18G181100.2.p 112 KGPWTQEEDDKIVELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 158
                          79******************************.*************97 PP
3Myb_DNA-binding50.16.3e-16164207146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++WT eE++ l +a++ +G++ W+ Ia+ +  gRt++ +k++w++
  Glyma.18G181100.2.p 164 KDAWTLEEELSLMNAHRIHGNK-WAEIAKVLH-GRTDNAIKNHWNS 207
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.72855106IPR017930Myb domain
SuperFamilySSF466891.87E-1457113IPR009057Homeodomain-like
SMARTSM007171.5E-1359108IPR001005SANT/Myb domain
PfamPF002492.6E-1460106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2062113IPR009057Homeodomain-like
CDDcd001673.65E-1263106No hitNo description
PROSITE profilePS5129433.151107162IPR017930Myb domain
SuperFamilySSF466893.26E-31109205IPR009057Homeodomain-like
SMARTSM007171.9E-18111160IPR001005SANT/Myb domain
PfamPF002496.7E-19112158IPR001005SANT/Myb domain
CDDcd001672.15E-16114158No hitNo description
Gene3DG3DSA:1.10.10.604.3E-28114161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-22162213IPR009057Homeodomain-like
PROSITE profilePS5129420.403163213IPR017930Myb domain
SMARTSM007177.3E-14163211IPR001005SANT/Myb domain
PfamPF002493.5E-14164207IPR001005SANT/Myb domain
CDDcd001671.12E-10166209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MAEVVKSEEC CQENKQSTAA SCSSVSEGSG SAIHKSPAIC SPASTSPSHR RTTGPIRRAK  60
GGWTAQEDET LRNAVAVFKG KSWKKIAEFF PDRSEVQCLH RWQKVLNPEL VKGPWTQEED  120
DKIVELVSKY GPTKWSLIAK SLPGRIGKQC RERWHNHLNP DIKKDAWTLE EELSLMNAHR  180
IHGNKWAEIA KVLHGRTDNA IKNHWNSSLK KKLDFYLATG RLPPIPKNSP QVPVKDTIRR  240
SASKSILGCS NKELNAAVET SSETTSISKL DDRGRNQFES SGTVREVGDC SSVPANESAD  300
SDCVECKPGS SNIDLSCSNS EQLSRANFGT TFGLISENSG INGNSNFEHC TNNGDMSSTR  360
LIGTSSQESP TCGSLCYEPP QLDGSVPIDS LYLNYICQQN EYCPSPTMSP IGFFTPPRVK  420
GSQLCTETPE SILKKAANTF PNTPSILRRR KTGAQTLTSP SKVLKVDNNP HTSKTERTDD  480
DSGSGHFSRS PASHGNGIDI PNNKAFNASP PYRLRSKRTA IVKSVEKQLE FAFDKEKNDD  540
KRSNVMTEDR LHETKLVVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-67592135159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-67592135159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.92600.0cotyledon| leaf| pod| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G181100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602590.10.0transcription factor MYB3R-3
RefseqXP_028215488.10.0transcription factor MYB3R-3-like
SwissprotQ8H1P91e-156MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A0B2Q2F20.0A0A0B2Q2F2_GLYSO; Myb-related protein 3R-1
TrEMBLA0A368UGR20.0A0A368UGR2_SOYBN; Uncharacterized protein
STRINGGLYMA18G39740.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-145myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]