PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G181100.3.p
Common NameLOC778081
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 475aa    MW: 52635.9 Da    PI: 8.1282
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G181100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.2e-202773148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd+++v++v ++G+  W++Ia+ ++ gR +kqc++rw+++l
  Glyma.18G181100.3.p 27 KGPWTQEEDDKIVELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 73
                         79******************************.*************97 PP
2Myb_DNA-binding50.45.1e-1679122146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++WT eE++ l +a++ +G++ W+ Ia+ +  gRt++ +k++w++
  Glyma.18G181100.3.p  79 KDAWTLEEELSLMNAHRIHGNK-WAEIAKVLH-GRTDNAIKNHWNS 122
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.53121IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-8326IPR009057Homeodomain-like
PROSITE profilePS5129433.1512277IPR017930Myb domain
SuperFamilySSF466892.51E-3124120IPR009057Homeodomain-like
SMARTSM007171.9E-182675IPR001005SANT/Myb domain
PfamPF002495.4E-192773IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-282776IPR009057Homeodomain-like
CDDcd001671.13E-162973No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2277128IPR009057Homeodomain-like
PROSITE profilePS5129420.40378128IPR017930Myb domain
SMARTSM007177.3E-1478126IPR001005SANT/Myb domain
PfamPF002492.8E-1479122IPR001005SANT/Myb domain
CDDcd001676.99E-1181124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MPEFFPDRSE VQCLHRWQKV LNPELVKGPW TQEEDDKIVE LVSKYGPTKW SLIAKSLPGR  60
IGKQCRERWH NHLNPDIKKD AWTLEEELSL MNAHRIHGNK WAEIAKVLHG RTDNAIKNHW  120
NSSLKKKLDF YLATGRLPPI PKNSPQVPVK DTIRRSASKS ILGCSNKELN AAVETSSETT  180
SISKLDDRGR NQFESSGTVR EVGDCSSVPA NESADSDCVE CKPGSSNIDL SCSNSEQLSR  240
ANFGTTFGLI SENSGINGNS NFEHCTNNGD MSSTRLIGTS SQESPTCGSL CYEPPQLDGS  300
VPIDSLYLNY ICQQNEYCPS PTMSPIGFFT PPRVKGSQLC TETPESILKK AANTFPNTPS  360
ILRRRKTGAQ TLTSPSKVLK VDNNPHTSKT ERTDDDSGSG HFSRSPASHG NGIDIPNNKA  420
FNASPPYRLR SKRTAIVKSV EKQLEFAFDK EKNDDKRSNV MTEDRLHETK LVVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-61112832159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-61112832159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.255180.0flower| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G181100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602590.10.0transcription factor MYB3R-3
RefseqXP_028215488.10.0transcription factor MYB3R-3-like
TrEMBLA0A368UJZ00.0A0A368UJZ0_SOYBN; Uncharacterized protein
STRINGGLYMA18G39740.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-115myb domain protein 3r-5